ML Engineer, Agents & Reasoning
CleraAbout the Role
We are a seed-stage deeptech startup at the intersection of AI, robotics, and materials science, building an advanced platform that dramatically accelerates the discovery of new materials — particularly for the energy sector. Our work combines physics-informed AI, autonomous laboratory systems, and rich multi-modal experimental data to compress decades-long R&D timelines into years.
As an ML Engineer, Agents & Reasoning, you will design and build the agentic AI systems that sit at the heart of our materials discovery workflows. You'll turn predictive models into reliable, operational decision-making agents that work alongside physical experiments, robotic systems, and scientific datasets. This is a high-ownership, end-to-end role on a small, cross-functional team of ~12–60 people based in Berlin, Germany (on-site).
Please note: visa sponsorship is not available for this role.
Responsibilities
- Design and implement agentic systems that plan, reason, and act across real materials discovery workflows
- Build decision-making systems that operate over experiments, simulations, and scientific datasets
- Select next actions under uncertainty and encode when autonomy should act versus when a human should stay in the loop
- Implement planning, control logic, and uncertainty-aware decision-making tailored to physical systems and lab environments
- Encode operational, experimental, and safety constraints directly into agent behavior
- Define stopping criteria, fallback strategies, and recovery mechanisms to prevent brittle behavior
- Collaborate with AI researchers to embed predictive models into agent workflows and translate model outputs into executable actions
- Integrate agents with laboratory automation and software systems so agent outputs drive real-world actions
- Instrument agents with logging, monitoring, and diagnostics to support observability and debugging
- Build evaluation frameworks that assess decision quality, learning efficiency, and system behavior — beyond simple model accuracy
- Analyze failure cases and iterate on system design based on real-world experimental outcomes
- Own systems end-to-end: from prototype through deployment and ongoing operation
Requirements
Required
- 4–8 years of experience building ML-driven or algorithmic decision-making systems in production or applied research settings
- Strong background in scientific or structured data modeling (rather than language-first or NLP-heavy systems)
- Experience with planning, control, optimization, probabilistic reasoning, or decision-making under uncertainty
- Proficiency in modern ML frameworks such as PyTorch or JAX, paired with strong general software engineering skills
- Comfortable owning systems end-to-end, from early prototype through to reliable production operation
- Ability to reason clearly about system behavior in complex, partially observable environments
- Clear communicator who can collaborate effectively across AI, engineering, and scientific teams
- English fluency (additional language skills a plus)
Nice to Have
- Technical curiosity about physical systems, laboratory experiments, and real-world constraints
- Experience in materials science, chemistry, cleantech, or adjacent scientific domains
- Familiarity with laboratory automation or robotics integration
- Additional European language skills (German in particular)
Location & Work Arrangement
This role is on-site in Berlin, Germany. We work closely as a team in person, and we expect this role to be based full-time at our Berlin office. Visa sponsorship is not available.
Why This Role
- Work on genuinely hard AI problems at the frontier of scientific discovery and physical-world autonomy
- Join an early-stage, mission-driven team where your work directly shapes both the product and the culture
- Collaborate across AI research, engineering, and laboratory science in ways that are rare in a single role
- Contribute to technology with meaningful real-world impact in the energy transition and advanced manufacturing
About Clera
Clera is an AI-powered recruitment platform that matches job candidates with startup roles based on their goals, skills, and preferences, then facilitates direct introductions between candidates and hiring managers at venture-backed companies.
Interested in this role?
Apply now to join Clera.